Program "Codon Code Aligner" for sequence assembly and alignment of DNA

■ This is an article posted on June 2020, 10, so the content of the information may be out of date.

Programs for DNA sequence assembly and sequence alignment on the Unipos website Codon Code Aligner Page has been added.

Codon Code Aligner Is a program for performing sequence assembly, contig editing, mutation detection, and more. It is compatible with Phred-Phrap and fully supports sequence quality scores.

You can take advantage of the latest algorithms for base calling and array assembly without the need for complicated command line options or learning Perl programming.It also features an easy-to-learn user interface.

About CodonCode Aligner function

・ Import sequences from text files
・ Import sequences from ABI, SCF, and FASTQ files
・ End clip
・ Vector trim
・ Assemble contigs
・ Align to a reference sequence
・ Align contigs to each other while keeping the links to the traces
・ Assemble or align in groups, based on sample names
・ Find heterozygous mutations
・ Analyze heterozygous insertions and deletions
・ Define regions of interest (“features”), for example low quality consensus regions
・ Quickly navigate between user-defined features
・ Generate phylogenetic trees and restriction maps
・ Run Phred and Phrap directly from Aligner projects
・ Export sequences and features
・ See difference tables and protein translations
・ Design primers
・ Assemble bacterial genomes and small NGS sequencing projects
・ Find enzymes for RFLP analysis & create virtual gel
・ Analyze methylated sequences & view raw trace data

* Codon Code Aligner is compatible with Windows and Mac OS X.