A customer involved in veterinary research contacted us for a workstation to analyze RNA-seq, Whole-Genome Bisulfite Sequencing, and ChIP-seq data. They wanted a configuration that would allow them to perform analysis smoothly and without stress using CLC Genomics Workbench.
Specifically, the client requested that a configuration like Case No. PC-10012 be realized within a budget of 100 million yen.
Reference: Case No. PC-10012 CLC Genomics Workbench machine (Xeon Scalable specification)
Based on your consultation, we proposed the following structure:
| CPU | Intel Xeon W5-2565X 3.20GHz (up to 3.0GHz at TB4.8) 18C/36T |
| memory | Total 128GB DDR5 5600 REG ECC 32GB x 4 |
| Storage 1 | 2TB SSD M.2 NVMe Gen4 |
| Storage 2 | 8TB HDD S-ATA |
| Video | NVIDIA RTX A400 4GB (MiniDisplayPort x4) |
| network | on board (2.5GbE x1 /10GbE x1) |
| Housing + power supply | Mid-tower case 1000W 80PLUS PLATINUM |
| OS | Microsoft Windows 11 Professional 64bit |
A two-CPU configuration like Case No. PC-10012 would have exceeded the budget, so we opted for a single CPU configuration with a Xeon W2-5X 2565 cores to balance cost and processing performance.
The memory capacity is 128GB (32GB x 4), which is within the budget.
There are four available memory slots, so you can increase the total memory capacity to 4GB by adding an additional 32GB memory module.
We understand that memory capacity is important, so if 256GB of memory is required, we will propose a configuration with adjusted CPU and storage specifications. Please consider the amount of memory required for actual calculations.
For storage, we chose a 2TB SSD M.2 and an 8TB HDD S-ATA in line with the example.
We can make changes to suit your needs, so please feel free to contact us.
■ Keywords・What is CLC Genomics Workbench? CLC Genomics Workbench is an integrated sequence analysis software for analyzing the huge amount of data output by next-generation sequencers. It has functions such as assembly, mapping, and mutation detection, and can be operated with a user-friendly interface. It supports data from various sequencers and enables a variety of analyses such as genome, transcriptome, and metagenome.
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