A customer inquired about a machine for using the next-generation sequencer analysis software "Bioconda3".The expected specs are as follows.
CPU: About Xeon 36 threads
Memory: ECC 64-128GB
Storage: SSD 1TB + HDD 6TB
OS: Ubuntu 20.04
Other: Bioconda3 pre-installed
In addition to Bioconda3, we plan to use BWA, GATK, STAR-fusion, Samtools, Bedtools, etc., and would like to make a proposal within the budget range of 140 million yen.
In our proposal, we quoted for a configuration that uses Xeon W with 36 threads.
Since 6TB HDD products are rarely distributed and there is little advantage in terms of cost, 8TB products are selected as alternatives.
In addition, although there is room in the upper limit of the budget, the video card is an entry-class product that only considers screen output because there is no software that uses GPGPU in the software you plan to use. If you also assume the use of GPU, it is possible to change to a higher-end product.
For other specifications, we prioritize the specifications you request for the time being, but if you would like a proposal that meets the upper limit of your budget, please do not hesitate to contact us.
Since Bioconda3 is introduced as a miniconda (compact version of Anaconda) channel, we assume that it will be shipped with the Bioconda channel registered.
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【Main Specifications】
| CPU | Xeon W-2295 (3.00GHz 18 cores) |
| memory | 128GB |
| Storage 1 | 1TB M.2 SSD |
| Storage 2 | 8TB HDD S-ATA |
| Video | Nvidia T400 |
| network | on board (10/100 / 1000Base-T x1 5G x1) |
| Housing + power supply | Tower housing + 850W |
| OS | Ubuntu 20.04 |
| Others | Bioconda3 installation settings |
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